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Magnetic Resonance Imaging

Elsevier BV

Preprints posted in the last 30 days, ranked by how well they match Magnetic Resonance Imaging's content profile, based on 21 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

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Spatiotemporal trajectories of formaldehyde fixation effects on quantitative MRI in postmortem human brains

Zeighami, Y.; Moqadam, R.; Sanches, L.; Frigon, E.-M.; Tremblay, C.; Adame Gonzalez, W.; Mirault, D.; Alasmar, Z.; Franco Piredda, G.; Turecki, G.; Maranzano, J.; Chakravarty, M.; Mechawar, N.; Dadar, M.

2026-05-09 neuroscience 10.64898/2026.05.05.723107 medRxiv
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IntroductionPostmortem human brain magnetic resonance imaging (MRI) offers a unique opportunity to study finer neuroanatomical details and enables direct correlations with gold standard histological and immunohistochemical assessments. However, to prevent tissue decay, postmortem brains are preserved in fixative solutions which can alter tissue properties and exert substantial impacts on the MRI signals. The present study investigates the impact of formalin fixation, the most commonly used solution for postmortem human brain preservation, on different quantitative MRI contrasts. Methods142 intact human brain hemispheres immersed in 10% formalin for a range of fixation durations (between 0 days and 20 years) were imaged in a 3T MRI scanner. A subset of 10 brains were further scanned repeatedly at days 0, 3, 10, 20, 30, 60, 90, and 120 to allow for better characterization of the initial transient effects of fixation. Voxel-wise T1 and T2* relaxation, T1/T2 ratio, and myelin water fraction (MWF) maps were generated for each specimen and timepoint, and linear and nonlinear models were used to examine the spatiotemporal changes associated with progressive fixation. ResultsAll investigated metrics were significantly impacted by formalin fixation, albeit at different rates and with differing regional patterns. T1 and T2* relaxation time decreased as a result of progressive fixation, whereas T1/T2 ratio and MWF measures increased. T1 relaxation and T1/T2 ratio showed nonlinear patterns with initially accelerated changes that decelerate in the first few months, whereas T2* relaxation and MWF changes followed a more linear trend. ConclusionFormaldehyde fixation exerts systematic changes on quantitative MRI signals that can be modeled and adjusted for to allow for harmonized comparisons of MRI metrics across brains fixed for differing durations. The distinct temporal trajectories observed across metrics highlight the need to account for fixation duration in study design and downstream analyses, particularly when integrating datasets acquired under heterogeneous conditions. Our findings provide a quantitative framework for correcting fixation-induced biases, thereby improving the interpretability and reproducibility of postmortem MRI studies.

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Software-defined Radar for MRI Motion Correction: A versatile, vendor-independent Platform

Maier, C.; Solomon, E.; Verghese, G.; Chandarana, H.; Block, K.-T.; Alon, L.

2026-05-21 radiology and imaging 10.64898/2026.05.16.26351399 medRxiv
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Purpose: To develop and evaluate a flexible, software-defined radar platform for contactless, vendor-independent motion detection and correction in MRI. Methods: A continuous-wave (CW) Doppler radar was implemented using a software-defined radio and the open-source GNU Radio framework. The system was deployed inside a 1.5T MRI scanner and synchronized with MRI acquisitions. We evaluated the performance in a custom-developed internal motion phantom and in healthy volunteers to track respiration and bulk motion. The radar-derived signal was validated against cine MRI and used to demonstrate both retrospective and prospective motion management techniques in phantom and in healthy volunteers. Results: The radar provided robust motion signals that correlated strongly with image-based ground truth signals in both phantom and volunteer experiments. Signal characteristics were found to be frequency-dependent, enabling optimization for different motion regimes. Retrospective correction of free-breathing abdominal data using the radar signal effectively suppressed respiratory artifacts, achieving image quality comparable to a self-gating approach. Prospective triggering successfully reduced motion artifacts in the phantom study. The system also reliably detected sporadic events such as swallowing during neck imaging. Conclusion: Software-defined radar was demonstrated to be an effective platform for both prospective and retrospective motion correction. Its independence from the MRI system, ultra-wide band capabilities, and body-region versatility enable the adaptation of the technique for a wide range of imaging applications and protocols.

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Large-domain histology-based diffusion MRI simulation via independent local simulations

Kohler, I. A.; Zheng, L.; Kuder, T. A.; Goedicke, O.; Ladd, M. E.; Hesser, J.

2026-05-14 biophysics 10.64898/2026.05.11.724295 medRxiv
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Diffusion MRI simulations based on realistic tissue microstructure provide a means to validate biophysical models and optimize acquisition protocols, but their computational cost restricts most studies to domains far smaller than a clinical voxel. The objective of this study was to develop an automated and scalable framework that converts whole-slide histology into diffusion MRI simulations at clinically relevant spatial scales while remaining feasible on standard workstation hardware. We present an end-to-end pipeline integrating two-dimensional whole-slide cell segmentation, mesh generation, and finite element Bloch-Torrey simulation. To enable simulations at large spatial scales without prohibitive memory growth, we introduce a subdomain tiling strategy in which the tissue domain is partitioned into extended subdomains simulated independently under no-flux boundary conditions. Signals are aggregated only from the central regions of each subdomain to minimize boundary artifacts. For an 800 {micro}m x 800 {micro}m histology-based domain, the aggregated signal differed by 0.07% from the corresponding full-domain finite element simulation while reducing wall-clock time from several days to hours and maintaining bounded memory usage independent of global domain size. When applied to a 2016 {micro}m x 2016 {micro}m heterogeneous region approximating the in-plane dimensions of a clinical voxel, the apparent diffusion coefficient obtained from the full domain differed from values computed in smaller dense and sparse subregions, demonstrating the influence of structural heterogeneity at clinically relevant scales on derived diffusion metrics. The proposed framework establishes an automated and memory-stable approach for generating diffusion MRI simulations directly from routine histology.

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An 80-channel receive array for 10.5T neuroimaging: Key considerations for SNR optimization

Waks, M.; Bratch, A.; Mercer, T.; Lagore, R. L.; Moeller, S.; Thotland, J.; DelaBarre, L.; Auerbach, E.; Wu, X.; Vizioli, L.; Yacoub, E.; Ugurbil, K.; Adriany, G.; Sadeghi-Tarakameh, A.

2026-05-11 neuroscience 10.64898/2026.05.06.722982 medRxiv
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PurposeHigh-density RF receive arrays are required to realize the inherently available SNR and parallel imaging advantages at ultrahigh field strengths, which are essential for high-resolution functional and anatomical brain MRI. This study aims to systematically assess the impacts of often-overlooked parasitic losses associated with various RF coil components, as these losses can degrade the realized SNR and cause significant deviation from the ultimate intrinsic SNR (uiSNR; the theoretical upper bound of available SNR). In addition, we seek to detail engineering solutions to each of these loss mechanisms in pursuit of achieving a higher fraction of the uiSNR limit. MethodsA 16-channel loop-folded dipole transceiver array was developed for 10.5T human head applications and paired with a fully-updated 64-channel receive-only loop array. The optimization of the receive array considered several factors, including (but not limited to) coil dimensions to accommodate a larger population, the size and number of loops to enhance SNR and parallel imaging performance, and circuit design strategies to minimize parasitic losses. The SNR and parallel imaging performance of the receive array were quantitatively assessed by comparison with the uiSNR, as well as existing high-channel-count receive arrays at 7T and 10.5T. Finally, the complete 16-channel transmit, 80-channel receive coil array was safety validated for human use and employed for high-resolution functional and anatomical MRI at 10.5T. ResultsInitial results show that the 80-channel array, featuring larger loops in an overlapped layout with optimized circuitry, significantly improves the SNR and approaches the uiSNR limit in a large fraction of the head, while maintaining or enhancing the parallel imaging performance compared to previously used non-overlap layout. ConclusionThis study suggests that, although the traditionally used high-channel-count loop receive array technology can approach the uiSNR limit in the >10T regime, meticulous design optimization--including systematic assessment and minimization of parasitic losses--has become increasingly critical for achieving this goal in this new field-strength territory.

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Real-time AI integration for MR to detect artifacts and guide pulse sequence adaptations

Gudmundson, A. T.; Shams, Z.; Gad, A.; Wang, S.; Simicic, D.; Murali-Manohar, S.; Simegn, G. L.; Özdemir, I.; Davies-Jenkins, C. W.; Yedavalli, V.; Oeltzschner, G.; Demirel, O. B.; Sulam, J.; schär, M.; Ganji, S.; Edden, R. A. E.

2026-05-07 neuroscience 10.64898/2026.05.04.722724 medRxiv
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PurposeTo present a first-of-its-kind artificial intelligence (AI-)integrated MR pulse sequence that detects out-of-voxel (OOV) artifacts in real-time (within-TR) and responds prospectively by updating the crusher gradient scheme. MethodsPer Excitation Real-time Execution & Guided Responses with Integrated Neural-network Evaluation (PEREGRINE), developed for deployment of deep learning models and sequence updates, operated time-domain (TD) and frequency-domain (FD) convolutional autoencoders that detect OOV artifacts. Scans without (AI-off) and with (AI-on) updates were collected from the prefrontal cortex of healthy volunteers using edited MRS. The degree of OOV contamination (OOV score) was quantified per transient based upon the prevalence of OOV signals in the TD and FD data. OOV scores above a user-defined threshold triggered an update of the gradient scheme, iterating through 48 permutations (6 axis transpositions x 8 polarity flips). ResultsWithin each 2-second TR, PEREGRINE successfully provided single-transient OOV scores and updated gradients accordingly. No difference was observed between the OOV scores from the full ("Full" condition) AI-on and AI-off sessions due to the AI-on scan cycling over better and worse gradient permutations relative to the AI-off scan. However, the AI-on scan had significantly lower OOV scores than the AI-off scan when selecting the transients where PEREGRINE persisted ("Dwell" condition) on a given gradient permutation. Ultimately, Fit Quality Number (FQN), from linear combination modeling, improved significantly for the AI-on compared to the AI-off scan. ConclusionPEREGRINE enabled an AI-integrated sequence allowing for real-time evaluation and reduction of OOV artifacts, identifying gradient modifications that produced less OOV contamination.

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Distant Dipoles: A Multi-Parameter and Multi-Objective Analysis of RF Coil Performance For 7T Body MRI

Haluptzok, T. D.; Sadeghi-Tarakameh, A.; Lagore, R. L.; Metzger, G. J.

2026-05-03 biophysics 10.64898/2026.04.29.721770 medRxiv
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PurposeTo address the limitations of single-distance, 1D performance metrics in RF coil design. This work introduces a multi-objective, volume-of-interest (VOI) based analysis to systematically characterize the trade-offs between power efficiency, pSAR efficiency, and homogeneity as a function of dipole length (l) and distance-to-load (d) for multiple dipole geometries and target anatomies. MethodsElectromagnetic simulations of straight and end-meandered dipole antennas were performed with varying lengths (100-500 mm) and distance-to-load (1-81 mm) over three anatomical targets (prostate, kidney, heart). Homogeneity, power efficiency, pSAR efficiency, and load sensitivity performance metrics were calculated within each anatomical VOI. Inter-element coupling at variable d was assessed in a 3-element array, and a subset of single-element simulations was experimentally validated using B1+ mapping. ResultsA fundamental trade-off was found between power efficiency and pSAR efficiency. Optimal power efficiency was achieved with shorter dipoles (150 mm < l < 300 mm) closer to the sample (d < 30 mm), while optimal pSAR efficiency and homogeneity were achieved with longer dipoles at further from the sample (d > 60 mm). Inter-element coupling increased with distance-to-load but could be managed by increasing element spacing. Experimental measurements were in good agreement with simulation trends. ConclusionIncreasing distance-to-load to 40-60 mm, compared with commonly used distances of 20-30 mm, offers a practical strategy for improving pSAR efficiency and homogeneity with a minimal decrease in power efficiency. This work provides a quantitative analysis that enables RF coil designers to make informed, data-driven decisions when developing next-generation body arrays and suggests that unshielded end-meandered dipoles could be an optimal transmit element geometry.

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Tractometry reproducibility and generalizability across scanners, scanner models, and acquisition protocols

Taguma, D.; Yokoi, I.; Kinjo, T.; Tsuchida, S.; Miyata, T.; Matsuda, T.; Lerma-Usabiaga, G.; Takemura, H.

2026-05-18 neuroscience 10.64898/2026.05.13.723388 medRxiv
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Diffusion-weighted magnetic resonance imaging (dMRI)-based tractometry enables the quantification of white matter tissue properties in living humans while preserving anatomical specificity. Although tractometry is highly reproducible when the same scanner and acquisition protocol are used, its generalizability across scanners and protocols remains unclear. To address this gap, we performed a traveling-head experiment involving five subjects to evaluate tractometry across progressively different acquisition conditions, including multiple scanners, different scanner models, and two distinct protocols. Tractometry was performed for 20 major white matter tracts using diffusion tensor imaging metrics, neurite orientation dispersion and density imaging (NODDI) metrics, and a semi-quantitative ratio metric (T1w/b0). Generalizability across dataset pairs was quantified using the intraclass correlation coefficient (ICC). Tractometry showed consistently high ICCs when the scanner and protocol were identical; however, ICCs declined as differences in scanner model and acquisition protocol increased. Fractional anisotropy and orientation dispersion index retained relatively high ICCs across these comparisons, whereas other metrics showed marked declines when scanners or protocols differed. ComBat harmonization partially mitigated these declines, but ICCs did not reach the levels observed for datasets acquired using identical scanners and protocols. Finally, the minimum detectable change (MDC) for tractometry in datasets pooled across scanners and protocols varied by tract; for example, the optic radiation showed a lower MDC than the cingulum hippocampus. These findings highlight both the strengths and limitations of tractometry in multisite studies and highlight the importance of quantifying scanner- and protocol-dependent effects for specific metrics and tracts when interpreting measurements from heterogeneous datasets.

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A Low-Cost, Microcontroller-Based Gas Delivery System for Respiratory Stimuli in MRI Studies

Blockley, N. P.; Alzaidi, A. A.; Milbourn, C. C.; Bulte, D. P.; Rudgewick-Brown, A.; Rieger, S. W.

2026-05-07 radiology and imaging 10.64898/2026.05.06.26351951 medRxiv
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PurposeTo present the design and validation of a lowcost, microcontrollerbased gas delivery system that automates fixed inspired respiratory stimuli for MRI experiments. MethodsThe system uses three solenoid valves controlled by an Arduinobased circuit to switch between premixed medical gas cylinders according to predefined timing protocols. By using the MRI scanner external timing signal, gas delivery can be synchronised with image acquisition. Both a permanently installed configuration and a portable enclosure were constructed using commercially available components, with a total material cost of approximately {pound}650. The system was integrated with a singleuse breathing circuit and evaluated using hypercapnic and hyperoxic stimulus paradigms. Endtidal oxygen and carbon dioxide were measured using a respiratory gas analyser and physiological responses were assessed using BOLD MRI at 3 T. ResultsThe system delivered reliable, repeatable gas transitions during MRItriggered protocols. During hypercapnia (n{square}={square}15), the mean increase in endtidal carbon dioxide was 8.7{square}{+/-}{square}1.8{square}mmHg from a baseline of 32.2{square}{+/-}{square}3.1{square}mmHg, producing a mean grey matter BOLD signal increase of 3.2{+/-}1.7%. During hyperoxia (n{square}={square}15), the mean increase in endtidal oxygen was 292.3{square}{+/-}{square}59.0{square}mmHg from a baseline of 114.5{square}{+/-}{square}10.7{square}mmHg, with an associated BOLD signal change of 1.2{+/-}1.7%. Across both protocols respiratory and BOLD responses were consistent across participants. ConclusionThis microcontrollerbased system provides an inexpensive and reliable method for administering fixed inspired respiratory stimuli with automated MRI synchronisation. It offers an intermediate option between simple manual systems and higher cost commercial gas blenders, making it well suited for technical and methodological studies in cerebrovascular reactivity, hyperoxiaBOLD and related applications.

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Generating Synthetic MR Perfusion Maps from DWI and FLAIR in Acute Ischemic Stroke: Development and External Validation of a Deep Learning Model

Matsulevits, A.; Koch, A.; Mahe-Verdure, C.; Bendszus, M.; Hilbert, A.; Boullet, M.; Marnat, G.; Mutke, M.; Aydin, O.; Olindo, S.; Sibon, I.; Frey, D.; Thiebaut de Schotten, M.; Tourdias, T.

2026-05-13 neuroscience 10.1101/2025.10.23.684079 medRxiv
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BackgroundMagnetic resonance imaging (MRI) is critical for acute stroke triage, but time-consuming, and often requires contrast injection for perfusion imaging. This study aimed to synthesize T-map perfusion maps from routinely available, non-contrast DWI and FLAIR using deep generative models. We hypothesized that relevant perfusion information could be inferred from these modalities to streamline imaging and reduce reliance on dynamic susceptibility contrast perfusion. MethodsAcute MRI data from 355 patients with anterior circulation stroke, including dynamic susceptibility contrast perfusion, were retrospectively collected from two European centers (Heidelberg: 2010-2018; Bordeaux: 2021-2022). Six versions of a denoising diffusion probabilistic model (DDPM) and a GAN architecture were trained to generate synthetic T-max perfusion maps from DWI, FLAIR, and infarct core mask as inputs. Performance was assessed by comparing synthetic and ground truth T-max maps using image similarity metrics. Regions with T-max >6s were compared using Dice coefficients, and mismatch volume distributions were analyzed. An ablation study quantified the contribution of each input. ResultsThe best performance was achieved by a DDPM with a 2.5D architecture using DWI, FLAIR, infarct core mask, and a perfusion-weighted loss function. It produced synthetic perfusion T-max maps with high similarity to ground truth under 110 seconds. The model showed strong spatial overlap for T-max >6s regions in internal validation (average Dice = 0.82, SD = 0.08), and external validation average (Dice 0.59, SD = 0.13), respectively. Synthetic maps closely matched ground-truth mismatch distributions, capturing key perfusion patterns. The infarct core mask played a critical role in model performance, alongside DWI and FLAIR inputs. ConclusionsWe propose a non-invasive, scalable framework to generate synthetic T-max perfusion maps from non-contrast MRI. This approach could expand access to perfusion data in acute stroke, shorten imaging protocols, and accelerate treatment decisions by eliminating the need for contrast-enhanced acquisition. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/684079v2_ufig1.gif" ALT="Figure 1"> View larger version (94K): org.highwire.dtl.DTLVardef@164235forg.highwire.dtl.DTLVardef@14e5489org.highwire.dtl.DTLVardef@190214eorg.highwire.dtl.DTLVardef@17a9e3a_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Reproducibility of Apparent Diffusion Coefficient and Restriction Spectrum Imaging Restriction Score in the Prostate Across MRI Sessions, Vendors, and Acquisition Settings: a Prospective Study

song, y.; Conlin, C. C.; Lee, K.-L.; Dornisch, A.; Barrett, T.; Do, S.; Do, D. D.; Margolis, D. J.; Rakow-Penner, R.; Dale, A.; Liss, M. A.; Seibert, T. M.

2026-05-13 radiology and imaging 10.64898/2026.05.10.26352843 medRxiv
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BackgroundDiffusion-weighted MRI is central to prostate cancer detection, but apparent diffusion coefficient (ADC) has limited reproducibility across scanners and sites. Restriction Spectrum Imaging restriction score maximum value (RSIrs-max) may provide a more reproducible biomarker. PurposeTo evaluate cross-session reproducibility of within-lesion mean ADC and RSIrs-max on prostate MRI, including same-vendor and cross-vendor comparisons, and in unfavorable-histology prostate cancer (uhPC) and different interpolation settings. Materials and MethodsIn this prospective study, participants with suspected or known prostate cancer enrolled from August 2022 to January 2026 underwent two MRI examinations including an RSI protocol. MRI-visible lesions were contoured on T2-weighted MRI; in participants with multiple lesions, the index lesion was selected. Mean ADC and RSIrs-max were measured within MRI-visible lesions. Analyses included all visible lesions, same-vendor and cross-vendor subgroups, participants with uhPC, and 20 participants with scans reconstructed with and without zero-filled interpolation (a setting with different defaults across vendors). Pearson correlation coefficients with 10,000 bootstrap resamples were used to estimate 95% confidence intervals. ResultsSixty-one male participants (median age, 69 years [IQR, 63-74]) were evaluated; 58 of 61 (95%) had MRI-visible lesions, and 26 of 58 (45%) had uhPC. For all MRI-visible lesions, correlations were 0.55 (95% CI: 0.23-0.76) for mean ADC and 0.83 (95% CI: 0.72-0.90) for RSIrs-max. In same-vendor scans, correlations were 0.76 (95% CI: 0.27-0.95) and 0.88 (95% CI: 0.72-0.96); in cross-vendor scans, they were 0.31 (95% CI: -0.07-0.62) and 0.79 (95% CI: 0.65-0.89), respectively. In uhPC, correlations were 0.42 (95% CI: -0.02-0.83) for mean ADC and 0.90 (95% CI: 0.77-0.96) for RSIrs-max. With inconsistent versus consistent interpolation, RSIrs-max correlation increased from 0.73 (95% CI: 0.48-0.89) to 0.89 (95% CI: 0.78-0.96). ConclusionADC showed limited reproducibility, particularly across vendors. RSIrs-max has stronger between-session reproducibility across same-vendor, cross-vendor, uhPC, and interpolation analyses.

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Automated Brain and CSF Volume Assessment in Infant Hydrocephalus Using Deep Learning

Yu, M.; Yoshikawa, M. H.; Luviano, A. S.; Schiff, S. J.; Monga, V.; Warf, B. C.; Grant, P. E.; Sutin, J.; Lin, P.-Y.

2026-05-08 radiology and imaging 10.64898/2026.05.07.26352592 medRxiv
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Accurate brain and cerebrospinal fluid (CSF) volume assessment is essential for pediatric hydrocephalus management. Current clinical practice relies on linear measurements that fail to capture complex three-dimensional ventricular morphology, while quantitative volumetric assessment remains limited by laborious processing and lack of clinically optimized automated tools. This study developed a rapid, automated AI-based intracranial segmentation model suitable for clinical workflows. We retrospectively analyzed 167 T2-weighted MRI scans from infants with hydrocephalus, randomly split into training (60%), validation (20%), and hold-out test (20%) sets. All scans were manually segmented into CSF, brain parenchyma, and background. Our model integrates DenseNet and U-Net architectures with feature smoothness regularization to enhance generalizability. Performance was evaluated using Dice scores and absolute relative volume error (ARVE) compared with state-of-the-art methods. The AI model achieved Dice scores of 95.7% for CSF and 96.4% for brain parenchyma on the hold-out test set, significantly outperforming FSL FAST (85.0% and 77.9%) and contemporary deep learning approaches (90.4% and 89.7%). Processing time was 0.8 seconds per scan using GPU acceleration. The model demonstrated consistent performance across different hydrocephalus etiologies and effectively handled challenging scenarios including noise, artifacts, and variable resolution. This study successfully developed a robust MRI segmentation model demonstrating superior accuracy and efficiency compared to existing methods. By incorporating domain-specific enhancements, the model enables rapid, clinically viable brain and CSF volume estimation for pediatric hydrocephalus care.

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Feasibility of PI-RADS Compliant Prostate MRI at 0.55T

Spencer, A. P. C.; Avola, E.; Ilanjian, G.; Matthey, J.; Ledoux, J.-B.; Dromain, C.; Vietti-Violi, N.; Jelescu, I.

2026-05-06 radiology and imaging 10.64898/2026.05.05.26352358 medRxiv
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PurposeTo demonstrate the feasibility of prostate MRI at low-field and provide an optimised low-field prostate MRI protocol. MethodsWe acquired bi-parametric prostate MRI in 15 healthy male volunteers (mean age 62 years, 95% CI 57-67.5), including tri-planar T2-weighted imaging (WI) and axial diffusion weighted imaging (DWI), with parameters adhering to PI-RADS guidelines. Deep learning reconstruction (DLR) was used to enhance image quality. SNR and CNR were measured in the prostate peripheral zone (PZ) and transitional zone (TZ). SNR was compared between T2-WI with and without DLR, between DWI data acquired with different b-values, and between different calculated b-value images. Radiologists assigned PI-QUAL qualitative image scores. ResultsThe acquisition time (minutes:seconds) was 4:02 for axial T2-WI and 6:32 for DWI. Axial T2-WI had a median (IQR) SNR of 8.72 (7.27-9.67) in the TZ and 12.84 (12.00-15.87) in the PZ. CNR between the PZ and TZ was 5.84 (4.06-6.82). DLR substantially improved T2-WI quality (p<0.05). The optimised DWI protocol had b-values of 50 and 800 s mm-2, with a calculated b-value image at 1500 s mm-2. Median apparent diffusion coefficient (ADC) values were 1.70 and 1.44x10-3 mm2 s-1 in the PZ and TZ, respectively. All participants had at least acceptable diagnostic quality (PI-QUAL score[&ge;]2/3), of which ten (67%) had optimal diagnostic quality (PI-QUAL score=3/3). ConclusionProstate MRI is feasible at low-field, providing clinically acceptable acquisition times and diagnostic quality images.

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From 3D Time-of-Flight Angiography to Accelerated 4D Arterial Spin Labeling Angiography: A Fast Few-Shot Transfer Learning Approach

Li, H.; Dragonu, I.; Jezzard, P.; Okell, T. W.; Chiew, M.

2026-05-20 neuroscience 10.64898/2026.05.18.725892 medRxiv
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PurposeTo develop a data-efficient deep learning framework for rapid reconstruction of highly accelerated 4D arterial spin labeling (ASL) magnetic resonance angiography (MRA) with robust generalization using extremely limited acquired data, addressing the challenges of prolonged acquisition and reconstruction time. MethodsA simulation-driven, few-shot transfer learning approach was adopted by leveraging publicly available 3D time-of-flight (TOF)-MRA data to generate realistic multi-coil complex-valued pseudo-ASL k-space datasets for large-scale pre-training. A 3D unrolled reconstruction network was trained on this simulated data using a histogram-weighted loss and subsequently extended to 4D using lightweight temporal fusion modules. Fine-tuning was performed using only two experimentally acquired 4D ASL-MRA datasets. The method was evaluated on retrospectively and prospectively undersampled Cartesian 4D ASL-MRA data acquired at 3T and compared with compressed sensing (CS) and locally low-rank (LLR) reconstructions. ResultsThe proposed method achieved superior reconstruction quality compared with CS and LLR, with improved vessel depiction, particularly in distal branches, and enhanced temporal fidelity. Quantitative evaluation demonstrated higher vessel-masked peak signal-to-noise ratio and structural similarity index measure, along with increased error entropy, indicating reduced noise and structured artifacts. The initial pre-trained model already outperformed conventional methods, while additional 4D fine-tuning further improved performance. Robust reconstruction was demonstrated in prospectively undersampled data and multi-slab acquisitions, enabling large-coverage, time-resolved angiography within clinically feasible scan times (4-6 min). ConclusionsSimulation-driven pre-training combined with few-shot fine-tuning enables accurate and rapid reconstruction of highly accelerated 4D ASL-MRA in data-limited settings. The proposed framework provides a practical pathway toward clinically feasible, non-contrast dynamic cerebrovascular imaging.

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Beyond iron concentration: iron aggregation shapes quantitative MRI in the human brain

Stuerz, A.; Panzer, M.; Glodny, B.; Gizewski, E. R.; Zoller, H.; Birkl, C.

2026-05-21 biophysics 10.64898/2026.05.19.726170 medRxiv
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Aceruloplasminemia (ACP) is a rare neurodegenerative disorder characterized by extreme cerebral iron overload and a shift towards larger iron aggregates, providing a unique possibility to study how iron aggregation shapes MRI contrast in vivo. We introduce a clinically feasible, multi-parametric quantitative MRI (qMRI) framework that combines quantitative susceptibility mapping (QSM), [Formula], and R2 to disentangle changes in total iron concentration from alterations in iron aggregation and its spatial organization at the cellular scale. Our biophysical model links the microstructure sensitive [Formula] ratio and the slope of the susceptibility-relaxation relationship (iron) to iron aggregation size and distribution. In a 3T qMRI study of three patients with ACP and three matched controls, we observe a marked increase in [Formula] and a pronounced increase of the [Formula]-QSM slope (iron: controls 154.09 {+/-} 52.89 s-1ppm-1; patients 296.68 {+/-} 57.18 s-1ppm-1; p = 0.016), consistent with enhanced iron aggregation and altered spatial organization. Model-based decomposition of transverse relaxation indicates that up to approximately 40% of the observed R2* elevation in ACP is attributable to changes in iron distribution beyond increased iron concentration alone. These findings establish a robust, translational qMRI approach for quantitative in vivo assessment of iron aggregation, revealing microstructural drivers of iron-related neurodegeneration that extend beyond bulk iron load.

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MPRAGE-derived quantitative T1 mapping to assess diffuse white matter alterations in multiple sclerosis.

Lavielle, A.; Munsch, F.; Ruet, A.; Tourdias, T.; Cremillieux, Y.

2026-05-10 neurology 10.64898/2026.05.04.26351019 medRxiv
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BackgroundMultiple sclerosis (MS) is characterized by focal white matter (WM) lesions, but subtle damage also occurs in normal-appearing white matter (NAWM). We developed a method to generate quantitative T1 maps from MPRAGE (Magnetization Prepared Rapid Gradient Echo) images and evaluated its ability to detect NAWM abnormalities across different MS phenotypes. MethodsT1 maps were derived from MPRAGE using a theoretical signal model and compared with MP2RAGE (Magnetization Prepared 2 Rapid Gradient Echoes) T1 values in four healthy volunteers. The method was then applied to 87 MS patients, divided into clinically isolated syndrome (CIS), relapsing-remitting MS (RRMS), and primary progressive MS (PPMS), with age- and sex-matched healthy controls. T1 was measured in NAWM and lesions. Histogram analysis provided mean T1, full width at half maximum (FWHM), and skewness. ResultsIn healthy volunteers, T1 values matched MP2RAGE. In controls matched to the MS cohort, T1 increased with age (r = 0.35, p < 0.05). CIS patients showed no significant differences in any metric. RRMS and PPMS patients showed unchanged mean NAWM T1 but significantly different distributions, with higher FWHM (p<0.05) and skewness (p<0.001). An increase in T1 values was observed in MS lesions compared to NAWM in all groups. ConclusionThis study confirms the feasibility of deriving quantitative T1 maps from standard MPRAGE, offering reliable information to facilitate MS monitoring without additional acquisitions.

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Consensus-based technical recommendations for clinical translation of renal Dynamic Contrast-Enhanced (DCE) MRI

Gunwhy, E. R.; Kurugol, S.; Serai, S.; van der Molen, A. J.; Abou El-Ghar, M.; Buckley, D. L.; Hockings, P. D.; Jones, R. A.; Lim, R. P.; Mendichovszky, I. A.; Pedersen, M.; Reynolds, H. M.; Sanmiguel Serpa, L. C.; Wentland, A.; Zoellner, F. G.; Sourbron, S.; Dekkers, I. A.

2026-05-14 radiology and imaging 10.64898/2026.05.11.26352525 medRxiv
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BackgroundDynamic contrast-enhanced (DCE) MRI has the potential to be a useful tool for non-invasively assessing renal haemodynamics and function, however insufficient standardisation and difficulties in post-processing remain barriers to clinical translation. PurposeTo develop expert consensus-based technical recommendations for performing renal DCE-MRI in humans, relating to aspects of patient preparation, MRI hardware and acquisition parameters, and data analysis. Study TypeSystematic consensus process using an approximation to the two-step modified Delphi method. PopulationNot applicable. Field Strength / Sequence1.5 T and 3 T / Renal gradient echo-based 3D DCE-MRI. AssessmentAn international panel of experts were recruited and surveyed following a modified Delphi method to create consensus-based technical recommendations. Key areas for consensus were initially identified through a mixture of online and in-person discussions, and an initial survey round consisting of open- and close-ended questions. Consensus statements were formulated and iteratively refined to create the final recommendations. Statistical TestsConsensus was defined as [&ge;] 75% agreement in response (excluding abstentions), and clear preference was defined as [60-74]% agreement among the experts. Statements with [&ge;]40% abstentions were either excluded from subsequent survey rounds or recirculated as a modified statement. Results22 experts initially participated in the Delphi panel, of which 16 responded to the first survey. 15 panellists responded to all subsequent surveys. Out of 46 statements, 37 reached consensus and one showed clear preference. [&ge;]40% abstention was found in seven statements which were excluded from the final set of recommendations. Data conclusionThese recommendations provide a starting point for MRI centres worldwide wishing to perform renal DCE-MRI, contributing to the harmonisation of DCE-MRI scan protocols and facilitating clinical translation. These recommendations provide a practical minimum technical dataset for renal DCE-MRI acquisition and analysis to improve cross-site comparability and support responsible clinical translation.

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Comparative Study on Image Quality of Deep Learning and Adaptive Statistical Iterative Reconstruction-V in Thin Layer CT of liver Lesions

Yang, J.; Li, L.; Cao, J.; Zhang, J.

2026-05-26 radiology and imaging 10.64898/2026.05.23.26353923 medRxiv
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Objective:This study aims to compare the advantages and disadvantages of DLIR and adaptive statistical iterative reconstruction-V (ASIR-V) in thin-slice (2.5 mm) CT images of hepatic lesions characterized by high and low contrast. Additionally, the study seeks to determine the optimal DLIR strength for the evaluation of liver lesions. Methods:A retrospective analysis was performed on 90 patients who underwent abdominal contrast-enhanced CT scans. Group A comprised 48 patients with low-contrast lesions, while Group B included 42 patients with high-contrast lesions. The acquired images were reconstructed using post-processing DLIR at low (DLIR-L), medium (DLIR-M), and high (DLIR-H) strengths, all with a slice thickness of 2.5 mm (subgroups A1-A3, B1-B3). Furthermore, images were reconstructed with ASIR-V at 50% strength at slice thicknesses of 2.5 mm and 5 mm (subgroups A4/B4 and A5/B5, respectively). CT values and standard deviations (SD) of the liver and lesions were measured, and the corresponding signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) were calculated. The edge rise slope (ERS) was determined using ImageJ software by measuring CT values along a line from the liver parenchyma to the lesion. Objective metrics were compared using one-way ANOVA, with independent samples t-tests applied for inter-group differences. Subjective scoring, which encompassed noise level, diagnostic confidence, and lesion margin delineation, was conducted by two radiologists, with differences analyzed using the Kappa test. Results: Objective evaluation revealed a progressive decrease in lesion SD and a progressive increase in SNR and CNR from subgroups A1/B1 to A3/B3. The SD of Group A2 decreased by 57.4% compared to A4, while the SNR and CNR of A2 icreased by 19.3% and 24.6% compared to A4. Although subgroup B2 had a lower SNR than B5, the difference was not statistically significant. SNR and CNR in B2 increased by 24.1% and 11.9%, respectively, compared to B4. ERS gradually decreased from A1/B1 to A3/B3. ERS values in A2 and B2 increased by 27.0% and 39.4%, respectively, relative to A5 and B5. Although A3 had a lower ERS than A1 and A2, all DLIR subgroups exhibited higher ERS than A5; similar trends were observed in Group B. Subjective evaluation indicated good inter-reader agreement (Kappa > 0.61, p < 0.05). As DLIR strength increased, noise scores rose progressively in both groups. However, noise in A2 and B2 was lower than in A4/A5 and B4/B5. Diagnostic confidence and lesion margin delineation scores were highest in A2 and B2, while all subjective scores were lowest in A5 and B5. Discussion: Most prior studies evaluated the liver, vessels, or confirmed that image quality can be guaranteed at low doses. However, there are few studies on specific individual lesions. Therefore, this study aims to investigate specific individual lesions. The details and detection rate were analyzed separately to confirm the clinical acceptability of 2.5-mm DLIR image in different contrast lesions. Conclusion: For both high- and low-contrast hepatic lesions, DLIR provides superior image quality compared to ASIR-V, with the 2.5mm DLIR-M setting being optimal. DLIR-M reduces image noise, improves spatial resolution, and produces images more suitable for diagnostic purposes.

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Voxel-wise temporal decomposition of hypoxia-targeted BOLD MRI: method development and proof-of-concept application in glioblastoma

Schmidlechner, T.; Stumpo, V.; Jehli, E.; Zerweck, L.; Bellomo, J.; Gönel, M.; Müller, F.; Sebök, M.; Bink, A.; Kulcsar, Z.; Weller, M.; Regli, L.; Fierstra, J.; van Niftrik, C. H. B.

2026-05-29 radiology and imaging 10.64898/2026.05.27.26354265 medRxiv
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Hypoxia-targeted BOLD MRI is a novel technique, which probes oxygenation physiology in response to a controlled transient hypoxia stimulus. In glioblastoma, the signal response is spatially and temporally heterogeneous. We developed a voxel-wise temporal decomposition framework for hypoxia-targeted BOLD MRI that separates the arrival of responses, transition phases, and steady state during controlled isocapnic hypoxia. Twenty healthy controls underwent 3-T BOLD MRI during a double hypoxic step challenge to establish a normative reference. Three patients with newly diagnosed glioblastoma were included as proof-of-concept cases. For each voxel, we estimated response arrival delay (Delaycorr), delay to plateau, delay to return and an O2-normalized steady-state response (HypoxiaSS). Healthy-control maps were used to construct a voxel-wise normative atlas and, for HypoxiaSS, a global-response-adjusted model for patient deviation mapping. In healthy controls, HypoxiaSS showed lower supratentorial between-subject variabilitythan both whole-stimulus comparators (coefficient of variation: 1.77 versus 2.36 for Hypoxiaavg) and higher voxel-level step-to-step agreement (ICC(2,1): median 0.951 versus 0.792 for Hypoxiaavg). Whole-stimulus averaging exhibited a systematic step-2 signal amplification present in 19 of 20 subjects, which was absent from HypoxiaSS. Asingle global response scalar explained a median 72.5% of voxel-wise between-subject variance in HypoxiaSS. In proof-of-concept patient analyses, G-adjusted HypoxiaSS deviation maps and timing maps identified spatially coherentabnormalities that were partly complementary and extended beyond conventional MRI-defined lesion margins.Temporal decomposition improves the stability and interpretability of hypoxia-targeted BOLD MRI and provides a practical framework for population-referenced physiological mapping and atlas-based deviation mapping in glioblastoma.

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Choroid plexus calcification detection using quantitative susceptibility mapping MRI

Hett, K.; Dubois, A.; Bonitz, I.; Considine, C. M.; Eaton, J.; Mcknight, C. D.; Claassen, D. O.; Donahue, M. J. J.; Trujillo, P.

2026-05-28 radiology and imaging 10.64898/2026.05.26.26354154 medRxiv
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Purpose. The choroid plexus (ChP) is the primary source of cerebrospinal fluid and an emerging marker of cerebral health, with enlargement and hypoperfusion reported in aging and neurodegeneration. However, frequent ChP calcifications can confound volumetric and perfusion measures. Although computed tomography (CT) is the gold standard for detecting calcification, it is rarely available in research MRI. Quantitative susceptibility mapping (QSM) offers an alternative sensitive to diamagnetic mineralization but lacks validated susceptibility thresholds. Method. Participants underwent CT and MRI within four weeks, including 3D T1-weighted and a multi-echo gradient echo QSM MRI. ChP calcifications were identified on CT using standard diagnostic criteria. Using the Bayes decision boundary framework, we identified optimal susceptibility thresholds for detecting diamagnetic signals consistent with calcification and compared these thresholds with multiple density levels measured on gold standard CT images. Results. Across all participants (n=20; age=62.2+-12.0 yrs), the optimal susceptibility threshold separating background ChP signal from calcifications was -0.10 ppm at 60 HU (low-density) and -0.15 ppm at 100 HU (high-density). Susceptibility values within calcified tissue exhibited a linear relationship with CT-derived tissue density. A significant positive association was observed between ChP volume and calcification volume among participants with detectable calcification (beta=2.26, p=0.047). Conclusion. This work should provide a practical framework for quantifying ChP calcifications routinely from MRI. The observed relationship between ChP volume and calcification volume highlights the importance of accounting for calcified tissue, particularly when calcification burden is substantial, when investigating ChP abnormalities in aging and neurodegenerative disease.

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Efficacy Validation of a Novel MRI-Based Whole-Body Rapid Bone Scan (WB-RBS) Strategy for Diagnosing Bone Metastases: A Prospective Trial

Wu, X.; Zhang, J.; He, Y.; Zhang, Y.; Kang, X.; Hu, W.; Li, Y.; Ma, H.; Wang, Y.; Song, Y.; Chen, X.; Huo, F.; Zhang, Y.; Yin, H.; Xi, Y.

2026-05-24 radiology and imaging 10.64898/2026.05.17.26352855 medRxiv
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Background: Traditional bone scintigraphy for detecting malignant bone metastases is limited by suboptimal accuracy and radiation exposure. Whole-body magnetic resonance imaging (WB-MRI), while an alternative, requires lengthy scan times and high patient compliance. Purpose: To develop a novel, rapid whole body bone screening (WB-RBS) MRI protocol and evaluate its diagnostic performance for bone metastasis detection. Materials and Methods: Patients with pathologically confirmed malignancies and healthy controls were prospectively enrolled. All participants underwent WB-RBS (acquisition time: about 10 min); patients additionally underwent WB-MRI (about 70 min). Three radiologists, blinded to clinical data, independently evaluated the images for bone metastases. A consensus expert diagnosis served as the reference standard to calculate the diagnostic performance of WB-RBS. Specificity was further assessed in the healthy control group. Results: Seventy patients and 19 healthy controls were included. WB-RBS demonstrated excellent inter-reader agreement at the patient level. Compared with the reference standard, WB-RBS achieved an accuracy of 77.1%-91.4% at the patient level and a slightly lower accuracy (70.6%-82.5%) at the lesion level. At diagnostic confidence thresholds 1-3, the correlations between WB-RBS ratings and the reference standard were statistically significant for both patient- and lesion-level analyses. Conclusion: WB-RBS showed favorable inter-reader agreement and high accuracy for bone metastasis screening at the patient level, while substantially reducing scan time and cost. Its rapid, radiation-free nature and high accessibility offer distinct clinical advantages, supporting its potential as an alternative screening tool to conventional bone scintigraphy.